However, the working network at the Bushehr plant - due to go online in a couple of weeks - has not been harmed, plan executive Mahmoud Jafari said.
The Stuxnet worm is able of seizing manage of industrial plants.
Some Western experts say its difficulty suggests it could usually have been combined by a "nation state".
It is the initial pointer that Stuxnet, that targets systems done by the German firm Siemens, has reached apparatus related to Iran's chief programme.
The West fears Iran's best objective is to erect chief weapons. Iran says its programme is directed solely at pacific appetite use.
Stuxnet is tailored to aim weaknesses in Siemens systems used to manage H2O supplies, oil rigs, power plants and other utilities.
The fact that Stuxnet has right away been rescued on the personal computers of staff will have no effect on skeleton to make the Bushehr plant functional next month, Mr Jafari said.
A team is right away perplexing to eliminate the rouge software, or malware, from a few affected computers, he told IRNA.
It is believed to be the first-known worm written to aim leading infrastructure facilities.
"An electronic fight has been launched against Iran", Mahmoud Liayi, head of the data technology legislature at the method of industries, told the state-run Iran Daily newspaper.
A working group of experts met final week to confer ways of fighting the worm, that Mr Liayi mentioned has right away putrescent about 30,000 IP addresses in Iran.
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